Publications

Publications

2023

Kim-Holzapfel, D.M., Dey, R., Richardson, B.C., Arachchige, D., Reddy, K., De Vitto, H., Bhandari, J. and French, J.B., 2023. Human uridine 5′-monophosphate synthase stores metabolic potential in inactive biomolecular condensates. Journal of Biological Chemistry, 299(3). https://doi.org/10.1016/j.jbc.2023.102949

Le, L.T.M., Thompson, J.R., Dehghani‐Ghahnaviyeh, S., Pant, S., Dang, P.X., French, J.B., Kanikeyo, T., Tajkhorshid, E. and Alam, A., 2023. Cryo‐EM structures of human ABCA7 provide insights into its phospholipid translocation mechanisms. The EMBO Journal, 42(3), p.e111065. https://doi.org/10.15252/embj.2022111065

Grimm, C., Liu, B., Flegler V.J. and Kim J.J., 2023. Developing protein structure figures. Trends in Biochemical Sciences, 48(3), pp.199-202. https://doi.org/10.1016/j.tibs.2022.09.002

Bu, F., Kompaniiets, D. and Liu, B., 2023. How to compile different types of structural visualizations in one panel. Trends in Biochemical Sciences, 48(3), pp.303-304. https://doi.org/10.1016/j.tibs.2022.09.007

2022

Richardson, B.C., Shek, R., Van Voorhis, W.C. and French, J.B., 2022. Structure of Klebsiella pneumoniae adenosine monophosphate nucleosidase. Plos one, 17(10), p.e0275023. https://doi.org/10.1371/journal.pone.0275023

Hu, Y. and Liu, B., 2022. Roles of zinc-binding domain of bacterial RNA polymerase in transcription. Trends in Biochemical Sciences. https://doi.org/10.1016/j.tibs.2022.03.007

Ye, G., Liu, B. and Li, F., 2022. Cryo-EM structure of a SARS-CoV-2 omicron spike protein ectodomain. Nature communications, 13(1), p.1214. https://doi.org/10.1038/s41467-022-28882-9

Le, L.T.M., Thompson, J.R., Dang, P.X., Bhandari, J. and Alam, A., 2022. Structures of the human peroxisomal fatty acid transporter ABCD1 in a lipid environment. Communications Biology, 5(1), pp.1-8. https://doi.org/10.1038/s42003-021-02970-w

2021

Shi, W., Zhou, W., Chen, M., Yang, Y., Hu, Y. and Liu, B., 2021. Structural basis for activation of Swi2/Snf2 ATPase RapA by RNA polymerase. Nucleic acids research, 49(18), pp.10707-10716. https://doi.org/10.1093/nar/gkab744

Liu, C., Shi, W., Becker, S.T., Schatz, D.G., Liu, B. and Yang, Y., 2021. Structural basis of mismatch recognition by a SARS-CoV-2 proofreading enzyme. Science, 373(6559), pp.1142-1146. https://doi.org/10.1126/science.abi9310

Yang, Y., Liu, C., Zhou, W., Shi, W., Chen, M., Zhang, B., Schatz, D.G., Hu, Y. and Liu, B., 2021. Structural visualization of transcription activated by a multidrug-sensing MerR family regulator. Nature communications, 12(1), pp.1-14. https://doi.org/10.1038/s41467-021-22990-8

Shi, W., Zhang, B., Jiang, Y., Liu, C., Zhou, W., Chen, M., Yang, Y., Hu, Y. and Liu, B., 2021. Structural basis of copper-efflux-regulator-dependent transcription activation. Iscience, 24(5), p.102449. https://doi.org/10.1016/j.isci.2021.102449

Bhatt, V.S., Ashley, R. and Sundborger-Lunna, A., 2021. Amphipathic motifs regulate N-BAR protein endophilin B1 auto-inhibition and drive membrane remodeling. Structure, 29(1), pp.61-69. https://doi.org/10.1016/j.str.2020.09.012

2020

Gao, Y.G., My Le, L.T., Zhai, X., Boldyrev, I.A., Mishra, S.K., Tischer, A., Murayama, T., Nishida, A., Molotkovsky, J.G., Alam, A. and Brown, R.E., 2020. Measuring Lipid Transfer Protein Activity Using Bicelle-Dilution Model Membranes. Analytical chemistry, 92(4), pp.3417-3425. https://doi.org/10.1021/acs.analchem.9b05523

Shi, W., Jiang, Y., Deng, Y., Dong, Z. and Liu, B., 2020. Visualization of two architectures in class-II CAP-dependent transcription activation. PLoS biology, 18(4), p.e3000706. https://doi.org/10.1371/journal.pbio.3000706

Shi, W., Zhou, W., Zhang, B., Huang, S., Jiang, Y., Schammel, A., Hu, Y. and Liu, B., 2020. Structural basis of bacterial σ28‐mediated transcription reveals roles of the RNA polymerase zinc‐binding domain. The EMBO Journal, 39(14), p.e104389. https://doi.org/10.15252/embj.2020104389

Chakraborty, A., Aziz, F., Roh, E., Le, L.T.M., Dey, R., Zhang, T., Rathore, M.G., Biswas, A.S., Bode, A.M. and Dong, Z., 2020. Knock-down of the TIM/TIPIN complex promotes apoptosis in melanoma cells. Oncotarget, 11(20), p.1846. https://doi.org/10.18632/oncotarget.27572

Bhatt, V., Shi, K., Salamango, D.J., Moeller, N.H., Pandey, K.K., Bera, S., Bohl, T.E., Kurniawan, F., Orellana, K., Zhang, W. and Grandgenett, D.P., 2020. Structural basis of host protein hijacking in human T-cell leukemia virus integration. Nature communications, 11(1), pp.1-9. https://doi.org/10.1038/s41467-020-16963-6